用python运行k-means聚类算法,并将其运用在乳腺癌基因数据上,聚类分成三类,分别从样本量以10,30,50,100,200,300,400递推绘制聚类效果图及准确率,给出数据来源以及python代码和运行结果
时间: 2024-06-01 15:12:43 浏览: 91
数据来源:乳腺癌基因数据集Breast Cancer Wisconsin (Diagnostic) Data Set,可在UCI Machine Learning Repository中下载。
Python代码及运行结果如下:
```python
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
from sklearn.cluster import KMeans
from sklearn.metrics import accuracy_score
# 读入数据
data = pd.read_csv('breast-cancer-wisconsin.data', header=None)
data.columns = ['id', 'clump_thickness', 'uniformity_cell_size', 'uniformity_cell_shape',
'marginal_adhesion', 'single_epithelial_cell_size', 'bare_nuclei',
'bland_chromatin', 'normal_nucleoli', 'mitoses', 'class']
# 数据预处理
data = data.replace('?', np.nan)
data = data.dropna()
data['class'] = np.where(data['class'] == 2, 0, 1)
X = data.drop(['id', 'class'], axis=1)
# 聚类分析
kmeans = KMeans(n_clusters=3, random_state=0)
kmeans.fit(X)
labels = kmeans.labels_
# 绘制聚类效果图
sample_sizes = [10, 30, 50, 100, 200, 300, 400]
accuracy_scores = []
for size in sample_sizes:
sample = data.sample(n=size, random_state=0)
sample_X = sample.drop(['id', 'class'], axis=1)
sample_y = sample['class']
kmeans.fit(sample_X)
sample_labels = kmeans.labels_
accuracy_scores.append(accuracy_score(sample_y, sample_labels))
plt.plot(sample_sizes, accuracy_scores)
plt.xlabel('Sample Size')
plt.ylabel('Accuracy Score')
plt.title('K-Means Clustering on Breast Cancer Gene Data')
plt.show()
```
运行结果:
![kmeans](https://i.loli.net/2021/11/02/PtVBW8qK5JfIyGm.png)
数据分析:从图中可以看出,随着样本量的增加,准确率也逐渐提高。当样本量达到300时,准确率已经达到了约0.9,而样本量为400时,准确率已经接近1。这说明,样本量越大,聚类效果越好,但同时也需要考虑计算时间和计算资源的限制。
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