Traditional network security situation prediction methods depend on the accuracy of historical situation value. Moreover, there are differences in correlation and importance among various network security factors. In order to solve these problems, a combined prediction model based on the temporal convolution attention network (TCAN) and bi-directional gate recurrent unit (BiGRU) network optimized by singular spectrum analysis (SSA) and improved quantum particle swarm optimization algorithm (IQPSO) was proposed. This model was first decomposed and reconstructed into a series of subsequences through the SSA of network security situation data. Next, a prediction model of TCAN-BiGRU was established for each subsequence, respectively. The TCN with relatively simple structure was used in the TCAN to extract features from the data. Besides, the improved channel attention mechanism (CAM) was used to extract important feature information from TCN. Afterwards, the before-after status of the learning situation value of the BiGRU neural network was used to extract more feature information from sequences for prediction. Meanwhile, an improved IQPSO was proposed to optimize the hyper-parameter of the BiGRU neural network. Finally, the prediction results of subsequence were superimposed to obtain the final predicted value. In the experiment, on the one hand, the IQPSO was compared with other optimization algorithms; and the results showed that the IQPSO has better optimization performance; on the other hand, the comparison with traditional prediction methods was performed through the simulation experiment and the established prediction model; and the results showed that the combined prediction model established has higher prediction accuracy.
时间: 2023-03-08 10:19:20 浏览: 104
答:基于时间卷积注意网络(TCAN)和双向门驱动单元(BiGRU)网络,结合奇异谱分析(SSA)和改进量子粒子群优化算法(IQPSO)的联合预测模型,解决了传统网络安全态势预测方法依赖于历史态势值的准确性,以及各网络安全因子之间的相关性和重要性差异问题,在实验中,一方面将IQPSO与其他优化算法进行比较,结果表明IQPSO具有更好的优化性能;另一方面,通过仿真实验和建立的预测模型与传统预测方法进行比较,结果表明所建立的联合预测模型具有更高的预测准确性。
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精简下面表达:Existing protein function prediction methods integrate PPI networks and multivariate bioinformatics data to improve the performance of function prediction. By combining multivariate information, the interactions between proteins become diverse. Different interactions’ functions in functional prediction are various. Combining multiple interactions simply between two proteins can effectively reduce the effect of false negatives and increase the number of predicted functions, but it can also increase the number of false positive functions, which contribute to nonobvious enhancement for the overall functional prediction performance. In this article, we have presented a framework for protein function prediction algorithms based on PPI network and semantic similarity with the addition of protein hierarchical functions to them. The framework relies on diverse clustering algorithms and the calculation of protein semantic similarity for protein function prediction. Classification and similarity calculations for protein pairs clustered by the functional feature are more accurate and reliable, allowing for the prediction of protein function at different functional levels from different proteomes, and giving biological applications greater flexibility.The method proposed in this paper performs well on protein data from wine yeast cells, but how well it matches other data remains to be verified. Yet until now, most unknown proteins have only been able to predict protein function by calculating similarities to their homologues. The predictions result of those unknown proteins without homologues are unstable because they are relatively isolated in the protein interaction network. It is difficult to find one protein with high similarity. In the framework proposed in this article, the number of features selected after clustering and the number of protein features selected for each functional layer has a significant impact on the accuracy of subsequent functional predictions. Therefore, when making feature selection, it is necessary to select as many functional features as possible that are important for the whole interaction network. When an incorrect feature was selected, the prediction results will be somewhat different from the actual function. Thus as a whole, the method proposed in this article has improved the accuracy of protein function prediction based on the PPI network method to a certain extent and reduces the probability of false positive prediction results.
本文提出了一种基于PPI网络和语义相似性,加上蛋白质分层功能的蛋白质功能预测算法框架,对酒葡萄酵母细胞的蛋白质数据表现出良好的效果,但其他数据的效果如何仍有待验证。此外,该框架中的功能特征选择的数量以及每个功能层中蛋白质特征的选择量,对于后续功能预测的准确度有很大影响。因此,在进行特征选择时,必须尽可能选择对整个交互网络重要的多种功能特征,从而提高蛋白质功能预测的准确性,减少错误预测的概率。
Write pytorch-based Python code to implement a neural network that solves binary classification problem with an output layer of a positively weighted sub-network plus a negatively weighted sub-network,where the negative weight is random and take the opposite of the absolute value of the standard normal distribution, the exact value of the two weights are obtained from the objective function by Back propagation. The activation function is set to tanh.
Sure, here's an example of PyTorch-based code that implements a neural network with a positively weighted sub-network and a negatively weighted sub-network:
```python
import torch
import torch.nn as nn
import torch.optim as optim
# Define the neural network architecture
class BinaryClassifier(nn.Module):
def __init__(self):
super(BinaryClassifier, self).__init__()
self.positive_weight = nn.Parameter(torch.Tensor(1))
self.negative_weight = nn.Parameter(torch.Tensor(1))
self.negative_weight.data = -torch.abs(torch.randn(1))
self.fc1 = nn.Linear(in_features=2, out_features=10)
self.fc2 = nn.Linear(in_features=10, out_features=1)
self.activation = nn.Tanh()
def forward(self, x):
x = self.activation(self.fc1(x))
positive_output = self.fc2(x) * self.positive_weight
negative_output = self.fc2(x) * self.negative_weight
output = positive_output + negative_output
return output
# Create an instance of the neural network
model = BinaryClassifier()
# Define the loss function and optimizer
criterion = nn.BCEWithLogitsLoss()
optimizer = optim.SGD(model.parameters(), lr=0.1)
# Generate random training data
X = torch.randn(100, 2)
y = torch.randint(0, 2, (100, 1)).float()
# Training loop
for epoch in range(100):
optimizer.zero_grad()
output = model(X)
loss = criterion(output, y)
loss.backward()
optimizer.step()
if (epoch + 1) % 10 == 0:
print(f"Epoch {epoch+1}: Loss = {loss.item()}")
# Use the trained model for prediction
test_input = torch.Tensor([[0.5, 0.5]])
prediction = torch.sigmoid(model(test_input))
print(f"Prediction: {prediction.item()}")
```
In this code, we define a `BinaryClassifier` class that inherits from `nn.Module`. It contains the positive weight and negative weight as trainable parameters, which are initialized with random values. The architecture consists of two fully connected layers with a tanh activation function. The positive and negative outputs are computed by multiplying the output of the second fully connected layer with their respective weights. The final output is the sum of the positive and negative outputs.
We use the binary cross-entropy loss (`nn.BCEWithLogitsLoss`) as the loss function and stochastic gradient descent (`optim.SGD`) as the optimizer. Random training data is generated, and the model is trained for 100 epochs. The loss is printed every 10 epochs. Finally, the trained model is used to make a prediction on a test input.
Please note that the code above assumes you have PyTorch installed and imported appropriately.