用python写一个光谱基线校正函数
时间: 2023-08-12 08:05:01 浏览: 57
好的,关于光谱基线校正函数的Python实现,我可以给出以下代码作为参考:
```
import numpy as np
from scipy.signal import savgol_filter
def baseline_correction(x, y, param):
# x: wavelength
# y: intensity
# param: Dictionary containing parameter information
# Extract baseline correction parameters
window_length = param['window_length']
poly_order = param['poly_order']
lam = param['lambda']
p = param['p']
# Savitzky-Golay filter
smoothed = savgol_filter(y, window_length, poly_order)
# Subtract smoothed baseline
corrected = y - smoothed
# Asymmetric least squares (ALS) algorithm to penalize negative deviations
w = np.ones(len(corrected))
for i in range(p):
z = corrected - w
z = z[z >= 0]
if len(z) == 0:
break
med = np.median(z)
mad = 1.4826*np.median(np.abs(z - med))
w[corrected <= (med - lam*mad)] = 0
# Adjust baseline corrected spectrum
adj_corrected = corrected + smoothed
# Return baseline corrected spectrum
return adj_corrected
```
这段代码实现了光谱基线校正的过程,其中用到了Savitzky-Golay filter和Asymmetric least squares (ALS) algorithm两个基础方法。这些方法的具体参数可以在param字典中设置和调整。在调用该函数时,你需要准备好波长值(x)和相应的光谱强度值(y),并将它们作为baseline_correction函数的参数传入。