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AN INTRODUCTION TO
BIOINFORMATICS ALGORITHMS
NEIL C. JONES AND PAVEL A. PEVZNER

An
Introduction
to
Bioinformatics
Algorithms

Sorin Istrail, Pavel Pevzner, and Michael Waterman, editors
Computational molecular b iology is a new discipline, bringing together com-
putational, statistical, experimental, and technological methods, which is
energizing and dramatically accelerating the discovery of new technologies
and tools for molecular biology. The MIT Press Series on Computational
Molecular Biology is intended to p rovide a unique and effective venue for
the rapid publication of monographs, textbooks, edited collections, reference
works, and lecture notes of the highest quality.
Computational Molecular Biology: An Algorithmic Approach
Pavel A. Pevzner, 2000
Computational Methods for Modeling Biochemical Networks
James M. Bower and Hamid Bolouri, editors, 2001
Current Topics in Computational Molecular Biology
Tao Jiang, Ying Xu, and Michael Q. Zhang, editors, 2002
Gene Regulation and Metabolism: Postgenomic Computation Approaches
Julio Collado-Vid es, editor, 2002
Microarrays for an Integrative Genomics
Isaac S. Kohane, Alvin Kho, and Atul J. Butte, 2002
Kernel Methods in Computational Biology
Bernhard Sc hölkopf, Koji Tsuda, and Jean-Philippe Vert, 2004
An Introduction to Bioinformatic s Algorithms
Neil C. Jones and Pavel A. Pevzner, 2004

An
Introduction
to
Bioinformatics
Algorithms
Neil C. Jones
Pavel A. Pe vzner
A Bradfo rd Book
The MIT Press
Cambridge, Massachusetts
London, England

© 2004 Massachusetts Institute of Technology
All rights reserved. No part of this book may be reproduced in any form by any
electronic or mechanical means (includi ng p hotocopying, re co rdi ng, or information
storage and retrieval) without permission i n writing from the publisher.
MIT Press books may be purchased at spe ci al quantity discounts for business or sales
promotional use. For information, please email special_sales@mitpress.mit.edu or
write to Special Sales Department, The MIT Press, 5 Cambridge Center, Cambridge,
MA 02142.
Typeset in 10/13 Lucida Bright by the authors usi ng L
A
T
E
X 2
ε
.
Printed and bound in the United States of America.
Library of Co ngress Cataloging-in-Publication Data
Jones, Neil C.
An introduction to bioinformatics algorithms/ by Neil C. Jones and Pavel A.
Pevzner.
p. cm.—(computational molecular biology series)
“A Bradf ord book.”
Includes bibliogr aphical references and index (p. ).
ISBN 0-262-10106-8 (hc : alk. paper)
1. Bioinformatics. 2. Algorithms. I. Pevzner, Pavel. II. Title
QH324.2.J66 2004
570’.285—dc22 2004048289
CIP
10 9 8 7 6 5 4 3 2 1
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