在networkx中实现Infomap算法具体代码
时间: 2023-04-05 20:01:19 浏览: 310
以下是实现Infomap算法的代码:
import networkx as nx
import infomap
# 创建一个有向图
G = nx.DiGraph()
# 添加节点
G.add_node(1)
G.add_node(2)
G.add_node(3)
# 添加边
G.add_edge(1, 2)
G.add_edge(2, 3)
G.add_edge(3, 1)
# 创建Infomap对象
im = infomap.Infomap()
# 将图添加到Infomap对象中
for node in G.nodes():
im.add_node(node)
for edge in G.edges():
im.add_link(edge[0], edge[1])
# 运行Infomap算法
im.run()
# 输出结果
for node in G.nodes():
print("Node %d belongs to module %d" % (node, im.get_modules(node)))
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在networkx中实现BGLL算法的代码
以下是实现BGLL算法的代码:
```python
import networkx as nx
from networkx.algorithms.community import greedy_modularity_communities
def BGLL_algorithm(G):
# Step 1: Initialize
communities = list(greedy_modularity_communities(G))
num_communities = len(communities)
q = nx.algorithms.community.modularity(G, communities)
# Step 2: Repeat until no improvement
improvement = True
while improvement:
improvement = False
for i in range(num_communities):
for j in range(i+1, num_communities):
# Step 3: Compute delta Q
delta_q = compute_delta_q(G, communities, i, j)
# Step 4: If delta Q is positive, merge the communities
if delta_q > 0:
merge_communities(communities, i, j)
num_communities -= 1
q += delta_q
improvement = True
return list(communities)
def compute_delta_q(G, communities, i, j):
# Compute the change in modularity if communities i and j are merged
delta_q = 0
for node in communities[i]:
for neighbor in G.neighbors(node):
if neighbor in communities[j]:
delta_q += 2 * (G[node][neighbor]['weight'] - compute_expected_weight(G, communities[i], communities[j]))
return delta_q
def compute_expected_weight(G, community1, community2):
# Compute the expected weight between community1 and community2
total_weight = sum(G.degree(node, weight='weight') for node in community1) + sum(G.degree(node, weight='weight') for node in community2)
expected_weight = 0
for node in community1:
expected_weight += sum(G[node][neighbor]['weight'] for neighbor in community2) / total_weight
return expected_weight
def merge_communities(communities, i, j):
# Merge communities i and j
communities[i] |= communities[j]
del communities[j]
```
希望能对你有所帮助!
networkx中使用modularity算法代码
可以使用以下代码实现networkx中的modularity算法:
```python
import networkx as nx
from networkx.algorithms.community.modularity_max import greedy_modularity_communities
# 创建一个图对象
G = nx.Graph()
# 添加节点和边
G.add_edges_from([(1, 2), (1, 3), (2, 3), (3, 4), (4, 5), (4, 6), (5, 6)])
# 使用modularity算法获取社区
communities = greedy_modularity_communities(G)
# 打印社区
print(communities)
```
这段代码会输出图G中的社区。
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