library(here) source(here::here("code", "libraries.R")) source(here::here("code", "funcs.R")) ## function to intersect multiple vectors intersect_all <- function(a,b,...){ Reduce(intersect, list(a,b,...)) } ## read data tpm.rsem <- read.table(here::here("data", "tpm_original.txt"), sep = "\t") counts.rsem <- read.table(here::here("data", "counts_original.txt"), sep = "\t") qc <- read.table(here::here("data", "qc_original.txt"), sep = "\t", stringsAsFactors = FALSE) # quality control mappings <- readRDS(here::here("data", "mappings.RDS")) # genes info ## scater intialize min_thresh_log_tpm <- 0.1 sceset_all <- SingleCellExperiment(assays = list(counts = as.matrix(counts.rsem), tpm = as.matrix(tpm.rsem), exprs = log2(as.matrix(tpm.rsem) + 1), expressed = log2(tpm.rsem + 1) > min_thresh_log_tpm), colData = qc, rowData = mappings) ## scater quality control最后一段命令无法顺利运行该咋办
时间: 2023-06-08 15:05:40 浏览: 41
这段代码是在R语言中调用here包,并分别载入了两个R脚本:libraries.R和funcs.R。其中here::here("code", "libraries.R")和here::here("code", "funcs.R")分别指定了这两个脚本所在的文件夹路径。
相关问题
aipucc: error while loading shared libraries: libtinfo.so.5:
error while loading shared libraries: libtinfo.so.5是一个错误信息,它表示在加载共享库libtinfo.so.5时出现了问题,无法找到该文件或目录。这个错误通常发生在Linux系统上,当软件或程序依赖于某个共享库文件,但系统找不到该文件时会出现这个错误。
解决这个问题的方法有几种:
1. 检查共享库是否存在:首先,你可以检查系统中是否存在libtinfo.so.5这个共享库文件。你可以使用以下命令来查找该文件的位置:`find / -name libtinfo.so.5`。如果文件不存在,你可以尝试安装该共享库,例如使用包管理器进行安装。
2. 检查动态库路径:如果共享库文件存在,但系统无法找到它,你可以检查系统的动态库路径。你可以使用以下命令来查看动态库路径:`echo $LD_LIBRARY_PATH`。确保动态库路径包含了libtinfo.so.5所在的文件夹。如果没有包含,你可以尝试将该文件夹添加到动态库路径中,例如使用`export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/lib`。
3. 更新软件或程序:如果以上方法都无法解决问题,你可以尝试更新相关的软件或程序,以确保它们与系统的共享库版本兼容。
需要注意的是,这里提供的解决方法是基于共享库文件缺失或路径配置错误的情况。如果问题仍然存在,可能需要进一步排查其他可能的原因。<span class="em">1</span><span class="em">2</span><span class="em">3</span>
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openssl: error while loading shared libraries: libssl.so.3: cannot open shar
引用、和<span class="em">1</span><span class="em">2</span><span class="em">3</span>
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