# hmmbuild :: profile HMM construction from multiple sequence alignments # HMMER 3.2.1 (June 2018); http://hmmer.org/ # Copyright (C) 2018 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # input alignment file: PRRSV.fna # output HMM file: mymodel.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # idx name nseq alen mlen W eff_nseq re/pos description #---- -------------------- ----- ----- ----- ----- -------- ------ ----------- Alignment input parse error: sequence AF159149.1 has alen 15390; expected 15520 while reading aligned FASTA file PRRSV.fna at or near line 447
时间: 2023-09-03 20:08:52 浏览: 70
根据你提供的信息,这是一段 HMMER 的命令行代码,用于从多个序列比对构建 profile HMM 模型。然而,在解析输入的比对文件 PRRSV.fna 时出现了错误,错误信息显示第 447 行附近的 AF159149.1 序列的长度为 15390,而期望长度为 15520。这可能是由于输入比对文件中的错误或不完整所致。需要检查输入文件并进行修正。
相关问题
NameError: name 'HMM' is not defined
NameError: name 'HMM' is not defined 这个错误意味着在当前的代码上下文中没有定义变量'HMM'。这可能是由于以下几种情况引起的:
1. 变量'HMM'没有被正确地声明或初始化。请确保在使用'HMM'之前,先声明并赋予它一个值。
2. 变量'HMM'是在某个作用域之外定义的。请检查变量的作用域,并确保在使用之前在正确的作用域内定义了它。
3. 变量'HMM'的名称拼写错误。请检查变量名是否拼写正确,并与之前定义的变量名一致。
请仔细检查代码,找到引起该错误的原因,并根据上述情况之一进行修正。<span class="em">1</span><span class="em">2</span><span class="em">3</span>
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jieba lcut NameError: name 'HMM' is not defined
jieba的lcut函数中出现了NameError: name 'HMM' is not defined错误,这是因为在使用jieba库时没有正确导入HMM模块。解决这个问题需要在代码中添加以下导入语句:
from jieba import posseg
import jieba.posseg as pseg
这样就可以正确使用jieba库的lcut函数了。<span class="em">1</span><span class="em">2</span><span class="em">3</span>
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