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INDEX
Introduction ................................................................................................................................. 1
Requirements............................................................................................................................... 1
Getting started ............................................................................................................................. 2
File menu .................................................................................................................................. 2
Edit menu .................................................................................................................................. 3
Data menu ................................................................................................................................. 3
Statistics menu .......................................................................................................................... 5
Analysis of an example ........................................................................................................... 11
Current measurement of functional diversity and its definitions ......................................... 21
Univariate approach ................................................................................................................ 21
Community Weighted Mean .............................................................................................................. 21
FDvar: Functional divergence (Mason et al. 2003) ......................................................................... 21
FRO: Functional regularity (Mouillot et al. 2005)........................................................................... 22
Multivariate approach ............................................................................................................. 24
FAD: Functional attribute diversity (Walker et al. 1999, 2002) ...................................................... 24
FD: Functional diversity based on dendrograms (Petchey & Gaston 2002, 2006, 2007; Podani &
Schmera 2006, 2007; Cianciaruso et al 2009) ................................................................................. 25
Q: Quadratic entropy (Rao 1982 and Pavoine et al. 2005) .............................................................. 27
Extended FD ..................................................................................................................................... 31
CHhV: Convex hull hyper-volume (Cornwell et al. 2006) ................................................................ 31
Multidimensional functional diversity indices (Villéger et al. 2008) ................................................ 32
FDis: Functional dispersion (Laliberté & Legendre 2009) .............................................................. 35
Taxonomic diversity index ..................................................................................................... 36
Richness (S) ...................................................................................................................................... 36
Shannon Index (H) ............................................................................................................................ 36
Eveness (E) ....................................................................................................................................... 37
Simpson Index (D) ............................................................................................................................ 37
References .................................................................................................................................. 38
Index of figures .......................................................................................................................... 42
R sources .................................................................................................................................... 43
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