请给出基于vtk、simpleITK、和pyqt5库实现读取nii.gz医学影像数据,并且能够3D影像数据展示的python代码
时间: 2023-05-25 19:02:29 浏览: 1186
以下是可以用于读取nii.gz医学图像数据并进行3D数据展示的Python代码。需要安装vtk、simpleITK和pyqt5库。
```
import vtk
import SimpleITK as sitk
from PyQt5.QtCore import *
from PyQt5.QtGui import *
from PyQt5.QtWidgets import *
class vtkWindow(QMainWindow):
def __init__(self, parent=None):
super(vtkWindow, self).__init__(parent)
self.renderer = vtk.vtkRenderer()
self.renWin = vtk.vtkRenderWindow()
self.renWin.AddRenderer(self.renderer)
self.iren = vtk.vtkRenderWindowInteractor()
self.iren.SetRenderWindow(self.renWin)
self.viewWidget = QVTKRenderWindowInteractor()
self.vtkLayout = QHBoxLayout(self.viewWidget)
self.vtkLayout.addWidget(self.iren)
self.setCentralWidget(self.viewWidget)
def show(self, *args, **kwargs):
super(vtkWindow, self).show(*args, **kwargs)
self.iren.Initialize()
self.renWin.Render()
def set_image(self, sitk_image):
image_data = sitk.GetArrayFromImage(sitk_image)
z, y, x = image_data.shape
imageData = vtk.vtkImageData()
imageData.SetDimensions(x, y, z)
imageData.AllocateScalars(vtk.VTK_UNSIGNED_CHAR, 1)
for i in range(z):
for j in range(y):
for k in range(x):
imageData.SetScalarComponentFromDouble(k, j, i, 0, image_data[i][j][k])
image_actor = vtk.vtkImageActor()
image_actor.SetInputData(imageData)
self.renderer.AddActor(image_actor)
self.renderer.ResetCamera()
self.renWin.Render()
if __name__ == "__main__":
app = QApplication([])
vtk_win = vtkWindow()
itk_image = sitk.ReadImage("path/to/nifti.gz")
vtk_win.set_image(itk_image)
vtk_win.show()
app.exec_()
```
这里主要用到了`vtkWindow`类,该类负责创建VTK窗口,并同时与pyqt5窗口进行交互。`set_image`函数用于将simpleITK图像导入到VTK窗口中进行显示,主要调用了VTK中的`vtkImageActor`类将simpleITK中的图像转换为VTK图像进行显示。```vtkWindow```继承QMainWindow可以在其他需要显示场景窗口的位置嵌入vtk进去。
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