import numpy as np import pandas as pd import os import shutil from sklearn.model_selection import train_test_split def copy_files(src, dest): src_files = os.listdir(src) for file_name in src_files: full_file_name = os.path.join(src, file_name) if os.path.isfile(full_file_name): shutil.copy(full_file_name, dest) def find_sepsis_file(data_path_dir): id_nosepsis = [] id_sepsis = [] for psv in os.listdir(data_path_dir): pid = pd.read_csv(os.path.join(data_path_dir, psv), sep='|') if 1 in np.array(pid.SepsisLabel): id_sepsis.append(psv) else: id_nosepsis.append(psv) return (id_nosepsis, id_sepsis) if __name__ == "__main__": data_path_A = "E:/谷歌下载/data/training/" data_path_B = "E:/谷歌下载/data/training_setB/" data_path = "E:/谷歌下载/data/all_dataset/" copy_files(data_path_A, data_path) copy_files(data_path_B, data_path) # divide a total of 40,336 populations into septic/no-septic (2,932/37,404) patients id_nosepsis, id_sepsis = find_sepsis_file(data_path) # development dateset (34,285 patients, 2,492 septic & 31,793 non-septic) # validation dataset (6,051 patients, 440 septic & 5,611 non-septic) train_nosepsis, test_nosepsis = train_test_split(id_nosepsis, test_size=0.15, random_state=12306) train_sepsis, test_sepsis = train_test_split(id_sepsis, test_size=0.15, random_state=12306) test_set = np.append(test_nosepsis, test_sepsis) np.save("E:/谷歌下载/data/train_nosepsis.npy", train_nosepsis) np.save("E:/谷歌下载/data/train_sepsis.npy", train_sepsis) np.save("E:/谷歌下载/data/test_set.npy", test_set)
时间: 2024-04-12 11:33:47 浏览: 125
这段代码的功能是将两个数据路径(`data_path_A`和`data_path_B`)下的所有文件复制到一个目标数据路径(`data_path`)中。然后,根据是否患有败血症(sepsis)将这些文件分为两组(`id_nosepsis`和`id_sepsis`)。
接下来,使用`train_test_split`函数将无败血症和有败血症的患者分别划分为训练集和测试集。其中,无败血症的训练集为`train_nosepsis`,有败血症的训练集为`train_sepsis`。测试集由无败血症和有败血症的测试样本组成,存储在`test_set`中。
最后,使用`np.save()`函数将划分好的训练集和测试集保存为.npy文件。
总结来说,这段代码的目的是将两个数据路径下的文件复制到一个目标数据路径中,并将这些文件根据是否患有败血症进行划分,最后保存划分好的训练集和测试集。
相关问题
运行下面代码需要安装哪些包from sklearn.model_selection import train_test_split from sklearn.decomposition import PCA import pandas as pd from sklearn import svm import numpy as np import math import matplotlib.pyplot as plt import matplotlib as mpl from matplotlib import colors from sklearn.model_selection import train_test_split from sklearn import datasets from matplotlib.colors import ListedColormap from sklearn.svm import SVC from sklearn.preprocessing import StandardScaler from sklearn.model_selection import StratifiedShuffleSplit,StratifiedKFold from sklearn.model_selection import GridSearchCV from sklearn.model_selection import GridSearchCV, LeaveOneOut, cross_val_predict from sklearn.model_selection import KFold from sklearn.linear_model import LogisticRegression from sklearn.naive_bayes import GaussianNB from sklearn.neighbors import KNeighborsClassifier from sklearn import svm from sklearn.tree import DecisionTreeClassifier from sklearn.ensemble import RandomForestClassifier from sklearn.metrics import roc_auc_score from sklearn.metrics import roc_auc_score import math import datetime import multiprocessing as mp from sklearn.ensemble import StackingClassifier from sklearn.pipeline import make_pipeline from sklearn.svm import LinearSVC import random
运行上述代码需要安装以下Python包:
- scikit-learn:提供了机器学习算法和工具,包括模型选择、特征提取、预处理等。可以使用`pip install scikit-learn`进行安装。
- pandas:提供了高性能、易于使用的数据结构和数据分析工具。可以使用`pip install pandas`进行安装。
- matplotlib:用于绘制图表和数据可视化的库。可以使用`pip install matplotlib`进行安装。
这些包是常用的数据分析和机器学习库,可以通过pip安装。在安装之前,确保你已经正确地配置了Python环境和pip工具。
在Python中想运行from sklearn.model_selection import train_test_split from sklearn.decomposition import PCA import pandas as pd from sklearn import svm import numpy as np import math import matplotlib.pyplot as plt import matplotlib as mpl from matplotlib import colors from sklearn.model_selection import train_test_split from sklearn import datasets from matplotlib.colors import ListedColormap from sklearn.svm import SVC from sklearn.preprocessing import StandardScaler from sklearn.model_selection import StratifiedShuffleSplit,StratifiedKFold from sklearn.model_selection import GridSearchCV from sklearn.model_selection import GridSearchCV, LeaveOneOut, cross_val_predict from sklearn.model_selection import KFold from sklearn.linear_model import LogisticRegression from sklearn.naive_bayes import GaussianNB from sklearn.neighbors import KNeighborsClassifier from sklearn import svm from sklearn.tree import DecisionTreeClassifier from sklearn.ensemble import RandomForestClassifier from sklearn.metrics import roc_auc_score from sklearn.metrics import roc_auc_score import math import datetime import multiprocessing as mp from sklearn.ensemble import StackingClassifier from sklearn.pipeline import make_pipeline from sklearn.svm import LinearSVC import random怎么操作
要在Python中运行这些代码,你需要确保已经安装了相应的包。大多数包都可以使用`pip`进行安装。
首先,在命令行中运行以下命令来安装所需的包:
```bash
pip install scikit-learn pandas matplotlib numpy
```
然后,在你的Python脚本中导入所需的库:
```python
from sklearn.model_selection import train_test_split
from sklearn.decomposition import PCA
import pandas as pd
from sklearn import svm
import numpy as np
import math
import matplotlib.pyplot as plt
import matplotlib as mpl
from matplotlib import colors
from sklearn.model_selection import train_test_split
from sklearn import datasets
from matplotlib.colors import ListedColormap
from sklearn.svm import SVC
from sklearn.preprocessing import StandardScaler
from sklearn.model_selection import StratifiedShuffleSplit, StratifiedKFold
from sklearn.model_selection import GridSearchCV
from sklearn.model_selection import GridSearchCV, LeaveOneOut, cross_val_predict
from sklearn.model_selection import KFold
from sklearn.linear_model import LogisticRegression
from sklearn.naive_bayes import GaussianNB
from sklearn.neighbors import KNeighborsClassifier
from sklearn.tree import DecisionTreeClassifier
from sklearn.ensemble import RandomForestClassifier
from sklearn.metrics import roc_auc_score
import datetime
import multiprocessing as mp
from sklearn.ensemble import StackingClassifier
from sklearn.pipeline import make_pipeline
from sklearn.svm import LinearSVC
import random
```
请确保在运行这些代码之前,已经安装了所需的Python库。如果遇到任何问题,请确保已正确安装这些库,并且版本与代码兼容。
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