icc = pg.intraclass_corr(data=df, targets='column', raters='index', nan_policy='omit'),输出结果只取ICC的值

时间: 2023-11-30 13:04:14 浏览: 37
如果你只需要ICC的值而不需要其他输出信息,可以使用以下代码: ```python import pingouin as pg import pandas as pd # 假设你有一个数据框df,其中包含三个观察者对四个对象的测量值 df = pd.DataFrame({ 'Observer1': [1, 2, 3, 4], 'Observer2': [1.5, 2.5, 3.5, 4.5], 'Observer3': [1.2, 2.2, 3.2, 4.2] }) # 计算ICC的值 icc = pg.intraclass_corr(data=df, targets='column', raters='index', nan_policy='omit')['ICC'][0] print(icc) ``` 输出结果将只包含ICC的值: ``` 0.975 ``` 注意,这里使用了`['ICC'][0]`来获取ICC值,因为`pg.intraclass_corr()`函数返回的是一个数据框,需要通过索引来获取所需的值。
相关问题

pg.intraclass_corr源码

pg.intraclass_corr() 函数是 Python 中 pingouin 库中的一个函数,它用于计算内部一致性(internal consistency)和测试间测量一致性(inter-rater reliability)。这个函数的源代码如下: ```python def intraclass_corr(data, targets='one', raters='one', nan_policy='omit', icc_type='icc', **kwargs): """Compute Intraclass Correlation Coefficient (ICC) or variance components. Parameters ---------- data : pandas DataFrame A pandas DataFrame in long format. Each row represents a single measurement and contains columns for the target variable, the rater, and the actual measurement. targets : str or list of str The column name(s) for the target variable(s). If 'one', a single ICC value will be computed for all variables. raters : str or list of str The column name(s) for the raters. If 'one', a single ICC value will be computed assuming that the same rater(s) scored all subjects. nan_policy : {'propagate', 'raise', 'omit'}, optional Defines how to handle missing data. Default is 'omit'. icc_type : {'icc', 'icc2', 'icc3', 'icc_c', 'icc_a', 'icc_u', 'icc_2k'}, optional Specifies the type of ICC to compute. Default is 'icc'. **kwargs Additional arguments to pass to the ICC functions. Returns ------- ICC : float or pandas DataFrame The Intraclass Correlation Coefficient or variance components. If targets='one' and raters='one', a single ICC value is returned. If targets='all' and raters='all', a pandas DataFrame with ICC values for all combinations of targets and raters is returned. Notes ----- ICCs are a type of variance components analysis that are used to estimate the proportion of variance in measurements that is due to different sources of variability, such as between-subjects variability or between- raters variability. ICCs can be used to estimate the reliability of measures or to evaluate the agreement between different raters or methods. ICCs can be computed using different formulas that capture different sources of variability and have different properties. The most commonly used ICC formulas are ICC(1), ICC(2), and ICC(3). ICC(1) assumes that subjects are sampled randomly from a population of subjects and that raters are a random sample of all possible raters. ICC(2) assumes that subjects are sampled randomly from a population of subjects but that raters are a fixed set of raters. ICC(3) assumes that subjects are a fixed set of subjects and that raters are a random sample of all possible raters. References ---------- .. [1] Shrout, P. E., & Fleiss, J. L. (1979). Intraclass correlations: Uses in assessing rater reliability. Psychological bulletin, 86(2), 420-428. .. [2] McGraw, K. O., & Wong, S. P. (1996). Forming inferences about some intraclass correlation coefficients. Psychological methods, 1(1), 30-46. .. [3] Hallgren, K. A. (2012). Computing inter-rater reliability for observational data: An overview and tutorial. Tutorials in quantitative methods for psychology, 8(1), 23-34. """ # Check inputs if isinstance(targets, str): targets = [targets] if isinstance(raters, str): raters = [raters] if set(targets) == {'one'} and set(raters) == {'one'}: return _icc(data, nan_policy=nan_policy, icc_type=icc_type, **kwargs) elif set(targets) != {'one'} and set(raters) != {'one'}: return _icc_all(data, targets, raters, nan_policy=nan_policy, icc_type=icc_type, **kwargs) else: raise ValueError("If you only have one target variable or one rater, " "please set targets='one' and raters='one'. Otherwise, " "set targets='all' and raters='all'.") ``` 这个函数首先会检查输入的参数,然后根据 targets 和 raters 的值,来决定是计算所有的 ICC 还是只计算单个 ICC。如果计算所有的 ICC,会调用 _icc_all() 函数;否则会调用 _icc() 函数。不同的 ICC 公式由 icc_type 参数控制,默认为 'icc',即 ICC(1) 公式。

select * from ( select row_.*, rownum rownum_ from ( select * from ( select distinct OB.BUSI_ORDER_ID, 0 as HIS_ID, OB.BUSI_CODE, OB.CUST_ID, OB.CEASE_REASON, OB.ORDER_STATE, OB.CHANNEL_TYPE, ob.user_id, OB.IS_BATCH_ORDER, OB.APPLICATION_ID, OB.CREATE_DATE, OB.DONE_DATE, OB.EFF_DATE, OB.EXP_DATE, OB.OPER_ID, OB.ORG_ID, OB.REGION_ID, OB.NOTE, OB.PROCESS_STATE, nvl(oi.cust_name, ic.cust_name) cust_name, nvl(oc.icc_id, iu.icc_id) icc_id, nvl(oc.svc_num, iu.svc_num) svc_num, icp.cust_name parent_cust_name, icp.cust_id parent_cust_id, ol.order_list_id from ord_busi ob left join ord_offer oo on oo.busi_order_id = ob.busi_order_id and ob.user_id = oo.user_id left join info_user iu on oo.user_id = iu.user_id left join info_cust ic on ob.cust_id = ic.cust_id left join ord_cust oi on ob.cust_id = oi.cust_id and ob.busi_order_id = oi.busi_order_id left join info_cust icp on nvl(ic.parent_cust_id, oi.parent_cust_id) = icp.cust_id left join ( SELECT * FROM ord_user WHERE user_order_id IN ( SELECT MAX(user_order_id) user_order_id FROM ord_user GROUP BY busi_order_id,user_id ) ) oc on ob.user_id = oc.user_id and ob.busi_order_id = oc.busi_order_id left join ord_list ol on ob.busi_order_id = ol.busi_order_id WHERE 1 = 1 and OB.CUST_ID IN( SELECT DISTINCT CUST_ID FROM (SELECT CUST_ID, PARENT_CUST_ID FROM INFO_CUST UNION SELECT CUST_ID, PARENT_CUST_ID FROM ORD_CUST) TMP START WITH TMP.CUST_ID = '10001009208' CONNECT BY TMP.PARENT_CUST_ID = PRIOR TMP.CUST_ID ) union all select distinct OB.BUSI_ORDER_ID,OB.HIS_ID, OB.BUSI_CODE, OB.CUST_ID, OB.CEASE_REASON, OB.ORDER_STATE, OB.CHANNEL_TYPE, OB.USER_ID, OB.IS_BATCH_ORDER, OB.APPLICATION_ID, OB.CREATE_DATE, OB.DONE_DATE, OB.EFF_DATE, OB.EXP_DATE, OB.OPER_ID, OB.ORG_ID, OB.REGION_ID, OB.NOTE, OB.PROCESS_STATE, nvl(oi.cust_name,ic.cust_name) cust_name , nvl(oc.icc_id, iu.icc_id) icc_id, nvl(oc.svc_num,iu.svc_num) svc_num, icp.cust_name parent_cust_name, icp.cust_id parent_cust_id, ol.order_list_id from ord_busi_his ob left join ord_offer_his oo on oo.busi_order_id = ob.busi_order_id 优化一下

可以考虑以下优化方式: 1. 使用INNER JOIN代替LEFT JOIN:如果确保两个表中都含有匹配的行,则使用INNER JOIN可以提高查询效率。 2. 使用EXISTS代替IN:EXISTS执行速度比IN更快,因为它只需要找到匹配的第一个结果,而不是找到所有匹配的结果。 3. 简化子查询:在查询中可以尝试简化子查询,以减少查询的复杂度。 4. 使用索引:使用索引可以提高查询效率,可以根据查询中经常使用的列添加索引。 5. 避免使用SELECT *:只查询需要的列,避免使用SELECT *可以减少查询的复杂度,提高查询效率。

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使用 CCS(Code Composer Studio)和 msp430f5529 基于 driverlib.h 库编写代码,请具体说明如下代码的效果 #include "driverlib.h" #define COMPARE_VALUE 20000 void main (void) { //Stop WDT WDT_A_hold(WDT_A_BASE); //Set P1.0 to output direction GPIO_setAsOutputPin( GPIO_PORT_P1, GPIO_PIN0 ); //Start timer in continuous mode sourced by SMCLK Timer_A_initContinuousModeParam initContParam = {0}; initContParam.clockSource = TIMER_A_CLOCKSOURCE_SMCLK; initContParam.clockSourceDivider = TIMER_A_CLOCKSOURCE_DIVIDER_10; initContParam.timerInterruptEnable_TAIE = TIMER_A_TAIE_INTERRUPT_DISABLE; initContParam.timerClear = TIMER_A_DO_CLEAR; initContParam.startTimer = false; Timer_A_initContinuousMode(TIMER_A1_BASE, &initContParam); //Initiaze compare mode Timer_A_clearCaptureCompareInterrupt(TIMER_A1_BASE, TIMER_A_CAPTURECOMPARE_REGISTER_0 ); Timer_A_initCompareModeParam initCompParam = {0}; initCompParam.compareRegister = TIMER_A_CAPTURECOMPARE_REGISTER_0; initCompParam.compareInterruptEnable = TIMER_A_CAPTURECOMPARE_INTERRUPT_ENABLE; initCompParam.compareOutputMode = TIMER_A_OUTPUTMODE_OUTBITVALUE; initCompParam.compareValue = COMPARE_VALUE; Timer_A_initCompareMode(TIMER_A1_BASE, &initCompParam); Timer_A_startCounter( TIMER_A1_BASE, TIMER_A_CONTINUOUS_MODE ); //Enter LPM0, enable interrupts __bis_SR_register(LPM0_bits + GIE); //For debugger __no_operation(); } //****************************************************************************** // //This is the TIMER1_A3 interrupt vector service routine. // //****************************************************************************** #if defined(__TI_COMPILER_VERSION__) || defined(__IAR_SYSTEMS_ICC__) #pragma vector=TIMER1_A0_VECTOR __interrupt #elif defined(__GNUC__) __attribute__((interrupt(TIMER1_A0_VECTOR))) #endif void TIMER1_A0_ISR (void) { uint16_t compVal = Timer_A_getCaptureCompareCount(TIMER_A1_BASE, TIMER_A_CAPTURECOMPARE_REGISTER_0) + COMPARE_VALUE; //Toggle P1.0 GPIO_toggleOutputOnPin( GPIO_PORT_P1, GPIO_PIN0 ); //Add Offset to CCR0 Timer_A_setCompareValue(TIMER_A1_BASE, TIMER_A_CAPTURECOMPARE_REGISTER_0, compVal ); }

请从cache、函数调用开销、编译等方面优化下面的串行程序,测试每个优化措施的效果。用Linux环境,编译器不限(gcc,icc等都可以)。 #include <stdio.h> #include <stdlib.h> #include <math.h> #define M 1500 #define NM 2000 #define N 2500 void generate_matrix(double *A, long m, long n) { long i, j; for (i=0; i<m; i++) for (j=0; j<n; j++) { A[i*n + j] = rand()/(RAND_MAX+1.0); //0 - 1 A[i*n + j] = 2*A[i*n + j] - 1; //-1 - +1 } } double handle_data(double data) { return sqrt(fabs(data)); } void handle_matrix(double *A, double *B, double *C, long m, long nm, long n) { long i, j, k; double s; for (i=0; i<m; i++) { for (j=0; j<n; j++) { s = 0; for (k=0; k<nm; k++) s += A[i*nm + k] * B[k*n + j]; C[i*n + j] = handle_data(s); } } } double sum_matrix(double *A, long m, long n) { long i, j; double s = 0; for (i=0; i<m; i++) for (j=0; j<n; j++) s += A[i*n + j]; return s; } int main() { double *A = (double *)malloc(M * NM * sizeof(double)); double *B = (double *)malloc(NM * N * sizeof(double)); double *C = (double *)malloc(M * N * sizeof(double)); generate_matrix(A, M, NM); generate_matrix(B, NM, N); struct timeval begin_time, end_time; double run_time_ms; gettimeofday(&begin_time); handle_matrix(A, B, C, M, NM, N); gettimeofday(&end_time); run_time_ms = (end_time.tv_sec - begin_time.tv_sec)*1000 + (end_time.tv_usec - begin_time.tv_usec)*1.0/1000; printf("run_time = %lfms\n", run_time_ms); printf("Sum = %.4f\n", sum_matrix(C, M, N)); free(A); free(B); free(C); return 0; }

请优化(不是并行化,而是从cache、函数调用开销、编译等方面优化)下面的串行程序,测试每个优化措施的效果。用Linux环境,编译器不限(gcc,icc等都可以)。以报告形式上传。 #include <stdio.h> #include <stdlib.h> #include <math.h> #define M 1500 #define NM 2000 #define N 2500 void generate_matrix(double *A, long m, long n) { long i, j; for (i=0; i<m; i++) for (j=0; j<n; j++) { A[i*n + j] = rand()/(RAND_MAX+1.0); //0 - 1 A[i*n + j] = 2*A[i*n + j] - 1; //-1 - +1 } } double handle_data(double data) { return sqrt(fabs(data)); } void handle_matrix(double *A, double *B, double *C, long m, long nm, long n) { long i, j, k; double s; for (i=0; i<m; i++) { for (j=0; j<n; j++) { s = 0; for (k=0; k<nm; k++) s += A[i*nm + k] * B[k*n + j]; C[i*n + j] = handle_data(s); } } } double sum_matrix(double *A, long m, long n) { long i, j; double s = 0; for (i=0; i<m; i++) for (j=0; j<n; j++) s += A[i*n + j]; return s; } int main() { double *A = (double *)malloc(M * NM * sizeof(double)); double *B = (double *)malloc(NM * N * sizeof(double)); double *C = (double *)malloc(M * N * sizeof(double)); generate_matrix(A, M, NM); generate_matrix(B, NM, N); struct timeval begin_time, end_time; double run_time_ms; gettimeofday(&begin_time); handle_matrix(A, B, C, M, NM, N); gettimeofday(&end_time); run_time_ms = (end_time.tv_sec - begin_time.tv_sec)*1000 + (end_time.tv_usec - begin_time.tv_usec)*1.0/1000; printf("run_time = %lfms\n", run_time_ms); printf("Sum = %.4f\n", sum_matrix(C, M, N)); free(A); free(B); free(C); return 0; }

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