写出如下代码带注释:在DBSCAN算法中,不使用sklearn,对一个TXT格式经纬度数据计算并绘制k-distance图。计算出每个点到距其第k近的点的距离,然后将这些距离从大到小排序后进行绘图
时间: 2024-05-16 20:13:37 浏览: 7
首先需要导入一些必要的库:
```python
import numpy as np
import matplotlib.pyplot as plt
```
接下来需要定义一些函数来实现DBSCAN算法的各个步骤:
```python
def euclidean_distance(x1, x2):
# 计算欧几里得距离
return np.sqrt(np.sum((x1 - x2)**2))
def range_query(X, point_index, eps):
# 寻找所有与点point_index距离小于eps的点
neighbors = []
for i in range(X.shape[0]):
if euclidean_distance(X[point_index], X[i]) < eps:
neighbors.append(i)
return neighbors
def dbscan(X, eps, min_samples):
num_points = X.shape[0]
# 初始化所有点为未访问状态
visited = np.zeros(num_points)
# 初始化所有点为噪声点
labels = np.full(num_points, -1)
# 初始化聚类编号
cluster_id = 0
for i in range(num_points):
# 如果该点已经被访问过,直接跳过
if visited[i]:
continue
# 获取该点的邻居
neighbors = range_query(X, i, eps)
# 如果邻居数量小于min_samples,则该点为噪声点
if len(neighbors) < min_samples:
labels[i] = -1
else:
# 如果邻居数量大于等于min_samples,则该点为核心点
labels[i] = cluster_id
# 对该点的邻居进行扩展
for j in neighbors:
# 如果邻居已经被访问过,直接跳过
if visited[j]:
continue
visited[j] = 1
# 获取邻居的邻居
new_neighbors = range_query(X, j, eps)
# 如果邻居数量大于等于min_samples,则将其加入当前聚类
if len(new_neighbors) >= min_samples:
for k in new_neighbors:
if k not in neighbors:
neighbors.append(k)
# 如果邻居尚未被分配聚类,则将其加入当前聚类
if labels[j] == -1:
labels[j] = cluster_id
# 更新聚类编号
cluster_id += 1
return labels
```
接下来,需要读取TXT格式的经纬度数据,并将其转化为Numpy数组:
```python
data = []
with open("data.txt", "r") as f:
for line in f:
lat, lon = line.strip().split(",")
data.append([float(lat), float(lon)])
data = np.array(data)
```
然后,需要计算每个点到距其第k近的点的距离,并将这些距离从大到小排序:
```python
# 计算每个点到距其第k近的点的距离
k = 4
distances = []
for i in range(data.shape[0]):
neighbors = range_query(data, i, eps)
if len(neighbors) < k:
distances.append(0)
else:
distances.append(sorted([euclidean_distance(data[i], data[j]) for j in neighbors])[k-1])
# 将距离从大到小排序
distances = sorted(distances, reverse=True)
```
最后,将距离作为y轴,点的编号作为x轴,进行绘图:
```python
plt.plot(range(data.shape[0]), distances)
plt.xlabel("Point Index")
plt.ylabel("Distance to k-th nearest neighbor")
plt.show()
```