brier <- brier_efron(y_train_true = y_dat, y_train_pred = y_dat_pred, y_newdata = y_val, y_newdata_pred = y_val_pred, times = c(1:10)) brier$bs改成python
时间: 2024-04-12 10:31:31 浏览: 176
在Python中,你可以使用上面提供的`brier_efron`函数来计算Brier分数。以下是将R代码转换为Python代码的版本:
```python
import pandas as pd
import numpy as np
from lifelines.utils import concordance_index
def brier_efron(y_train_true, y_train_pred, y_newdata, y_newdata_pred, times):
baseline = base_efron(y_train_true, y_train_pred)
y_newdata = pd.DataFrame(y_newdata, columns=["time", "event"])
y_newdata = y_newdata.sort_values(by="time")
y_newdata_pred = y_newdata_pred[y_newdata.index]
Y_x = np.zeros((len(y_newdata), len(times)))
for i, x in enumerate(times):
Y_x[:, i] = np.where(y_newdata["time"] > x, 1, 0)
kmf = KaplanMeierFitter().fit(y_newdata["time"], event_observed=y_newdata["event"])
G_t = kmf.survival_function_at_times(times).values.flatten()
G_x = kmf.predict(y_newdata["time"]).values.flatten()
W_x = np.zeros((len(y_newdata), len(times)))
for t in range(len(times)):
W_x[:, t] = (1 - Y_x[:, t]) * y_newdata["event"] / G_x + Y_x[:, t] / G_t[t]
Lambda_t = [baseline.baseline_hazard_[baseline.baseline_survival_.index(baseline.baseline_survival_.index <= x)].sum() for x in times]
S_x = np.exp(-np.exp(y_newdata_pred) @ np.array(Lambda_t))
BS_t = [np.mean(W_x[:, x] * (Y_x[:, x] - S_x[:, x])**2) for x in range(len(times))]
return pd.DataFrame({"time": times, "bs": BS_t})
# 使用示例
y_dat = [...] # y_train_true的值
y_dat_pred = [...] # y_train_pred的值
y_val = [...] # y_newdata的值
y_val_pred = [...] # y_newdata_pred的值
times = np.arange(1, 11)
brier_result = brier_efron(y_train_true=y_dat, y_train_pred=y_dat_pred, y_newdata=y_val, y_newdata_pred=y_val_pred, times=times)
print(brier_result)
```
请注意替换`[...]`部分的数据为实际的数据值。`brier_result`将是一个包含时间和Brier分数的数据框。你可以根据需要对结果进行进一步操作。
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