class Chuncat(nn.Module): def __init__(self, dimension=1): super(Chuncat, self).__init__() self.d = dimension def forward(self, x): x1 = [] x2 = [] for xi in x: xi1, xi2 = xi.chunk(2, self.d) x1.append(xi1) x2.append(xi2) return torch.cat(x1+x2, self.d)

时间: 2023-06-08 08:08:16 浏览: 57
你的问题是关于一个名为 Chuncat 的 PyTorch 模块的代码,这个模块有一个参数 dimension,它的 forward 方法接受一个输入 x,并将它拆成两部分,然后将这两部分按照指定的维度进行拼接后返回。这个模块的作用可以用于将一个数据流分成两个部分进行处理。
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class ContrastiveHead(nn.Module): """MLP head for contrastive representation learning, https://arxiv.org/abs/2003.04297 Args: dim_in (int): dimension of the feature intended to be contrastively learned feat_dim (int): dim of the feature to calculated contrastive loss Return: feat_normalized (tensor): L-2 normalized encoded feature, so the cross-feature dot-product is cosine similarity (https://arxiv.org/abs/2004.11362) """ def __init__(self, dim_in, feat_dim): super().__init__() self.head = nn.Sequential( nn.Linear(dim_in, dim_in), nn.ReLU(inplace=True), nn.Linear(dim_in, feat_dim), ) for layer in self.head: if isinstance(layer, nn.Linear): weight_init.c2_xavier_fill(layer) def forward(self, x): feat = self.head(x) feat_normalized = F.normalize(feat, dim=1) return feat_normalized

这是一个用于对比学习(contrastive learning)的 MLP 头部(MLP head)模型。在对比学习中,我们需要将输入的特征进行编码,使得相似的样本在编码后的特征空间中距离更近,不相似的样本距离更远。这个 MLP 头部的输入是 dim_in 维度的特征,输出是 feat_dim 维度的编码特征。在 MLP 头部中,我们使用了两个线性层和一个 ReLU 激活函数。在初始化时,我们使用了 Xavier 初始化方法对线性层的权重进行初始化。在前向传播时,我们将输入特征传递给 MLP 头部,得到编码特征,并对编码特征进行 L-2 归一化,使得特征向量的范数为 1,方便后续计算。最后返回编码后的特征。

这是DGCHead的代码,我想让你在这段代码里加入正余弦位置编码:class DualGCNHead(nn.Module): def __init__(self, inplanes, interplanes, num_classes): super(DualGCNHead, self).__init__() self.conva = nn.Sequential(nn.Conv2d(inplanes, interplanes, 3, padding=1, bias=False), BatchNorm2d(interplanes), nn.ReLU(interplanes)) self.dualgcn = DualGCN(interplanes) self.convb = nn.Sequential(nn.Conv2d(interplanes, interplanes, 3, padding=1, bias=False), BatchNorm2d(interplanes), nn.ReLU(interplanes)) self.bottleneck = nn.Sequential( nn.Conv2d(inplanes + interplanes, interplanes, kernel_size=3, padding=1, dilation=1, bias=False), BatchNorm2d(interplanes), nn.ReLU(interplanes), nn.Conv2d(interplanes, num_classes, kernel_size=1, stride=1, padding=0, bias=True) ###################### 512-->256 ) def forward(self, x): output = self.conva(x) output = self.dualgcn(output) output = self.convb(output) output = self.bottleneck(torch.cat([x, output], 1)) return output

Sure! Here is the modified code with added sine and cosine positional encoding: ``` import math class DualGCNHead(nn.Module): def __init__(self, inplanes, interplanes, num_classes, height, width): super(DualGCNHead, self).__init__() self.conva = nn.Sequential(nn.Conv2d(inplanes, interplanes, 3, padding=1, bias=False), BatchNorm2d(interplanes), nn.ReLU(interplanes)) self.dualgcn = DualGCN(interplanes) self.convb = nn.Sequential(nn.Conv2d(interplanes, interplanes, 3, padding=1, bias=False), BatchNorm2d(interplanes), nn.ReLU(interplanes)) self.height = height self.width = width self.pos_encoding = self.get_positional_encoding(interplanes, height, width) self.bottleneck = nn.Sequential( nn.Conv2d(inplanes + interplanes*2, interplanes, kernel_size=3, padding=1, dilation=1, bias=False), BatchNorm2d(interplanes), nn.ReLU(interplanes), nn.Conv2d(interplanes, num_classes, kernel_size=1, stride=1, padding=0, bias=True) ) def forward(self, x): output = self.conva(x) output = self.dualgcn(output) output = self.convb(output) output = torch.cat([x, output, self.pos_encoding], 1) output = self.bottleneck(output) return output def get_positional_encoding(self, d_model, height, width): pe_h = torch.zeros(height, d_model) pe_w = torch.zeros(width, d_model) for pos in range(height): for i in range(0, d_model, 2): pe_h[pos, i] = math.sin(pos / (10000 ** ((2 * i)/d_model))) pe_h[pos, i+1] = math.cos(pos / (10000 ** ((2 * (i+1))/d_model))) for pos in range(width): for i in range(0, d_model, 2): pe_w[pos, i] = math.sin(pos / (10000 ** ((2 * i)/d_model))) pe_w[pos, i+1] = math.cos(pos / (10000 ** ((2 * (i+1))/d_model))) pos_encoding = torch.cat([pe_h.unsqueeze(0).repeat(width, 1, 1).transpose(0, 1).unsqueeze(0), pe_w.unsqueeze(0).repeat(height, 1, 1).unsqueeze(0)], dim=0) return pos_encoding ``` The `get_positional_encoding` function generates the sine and cosine positional encoding based on the input dimension, height, and width. The encoding is then concatenated with the output of the dual GCN layer before passing through the bottleneck layer.

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class SelfAttention(nn.Module): def init(self, input_size=1, num_heads=1): super(SelfAttention, self).init() self.num_heads = 1 self.head_size = 1 self.query = nn.Linear(1, 1) self.key = nn.Linear(1, 1) self.value = nn.Linear(1, 1) self.out = nn.Linear(1, 1) def forward(self, inputs): batch_size, seq_len, input_size = inputs.size() # 128 706 1 # Split inputs into num_heads inputs = inputs.view(batch_size, seq_len, self.num_heads, self.head_size) inputs = inputs.permute(0, 2, 1, 3).contiguous() queries = self.query(inputs).view(batch_size, self.num_heads, seq_len, self.head_size) keys = self.key(inputs).view(batch_size, self.num_heads, seq_len, self.head_size) values = self.value(inputs).view(batch_size, self.num_heads, seq_len, self.head_size) # Compute attention scores scores = torch.matmul(queries, keys.permute(0, 1, 3, 2)) scores = scores / (self.head_size ** 0.5) attention = F.softmax(scores, dim=-1) # Apply attention weights to values attention_output = torch.matmul(attention, values) attention_output = attention_output.view(batch_size, seq_len, input_size) # Apply output linear layer output = self.out(attention_output) return output class DenseAttentionLayer(nn.Module): def init(self, input_size, return_alphas=True, name=None, num_heads=1): super(DenseAttentionLayer, self).init() self.return_alphas = return_alphas self.name = name self.num_heads = num_heads # If input comes with a hidden dimension (e.g. 5 features per gene) # print("len(input_size): ",len(input_size)) # 2 if len(input_size) == 3: self.feature_collapse = nn.Linear(input_size[-1], 1) input_size = (input_size[0], input_size[1]) self.attention = SelfAttention(input_size=1, num_heads=1) def forward(self, inputs): print("inputs.shape: ",inputs.shape) # torch.Size([128, 706]) output = self.attention(inputs) if self.return_alphas: alphas = F.softmax(output, dim=1) return torch.mul(inputs, alphas), alphas else: return output 对于上述代码其中numheads=1 headsize=1

帮我看看这段代码报错原因: Traceback (most recent call last): File "/home/bder73002/hpy/ConvNextV2_Demo/train+.py", line 274, in <module> train_loss, train_acc = train(model_ft, DEVICE, train_loader, optimizer, epoch,model_ema) File "/home/bder73002/hpy/ConvNextV2_Demo/train+.py", line 48, in train loss = torch.nan_to_num(criterion_train(output, targets)) # 计算loss File "/home/bder73002/anaconda3/envs/python3.9.2/lib/python3.9/site-packages/torch/nn/modules/module.py", line 889, in _call_impl result = self.forward(*input, **kwargs) File "/home/bder73002/hpy/ConvNextV2_Demo/models/losses.py", line 38, in forward index.scatter_(1, target.data.view(-1, 1).type(torch.LongTensor), 1) RuntimeError: Expected index [128, 1] to be smaller than self [16, 8] apart from dimension 1 部分代码如下:cls_num_list = np.zeros(classes) for , label in train_loader.dataset: cls_num_list[label] += 1 criterion_train = LDAMLoss(cls_num_list=cls_num_list, max_m=0.5, s=30) class LDAMLoss(nn.Module): def __init__(self, cls_num_list, max_m=0.5, weight=None, s=30): super(LDAMLoss, self).__init__() m_list = 1.0 / np.sqrt(np.sqrt(cls_num_list)) m_list = m_list * (max_m / np.max(m_list)) m_list = torch.cuda.FloatTensor(m_list) self.m_list = m_list assert s > 0 self.s = s self.weight = weight def forward(self, x, target): index = torch.zeros_like(x, dtype=torch.uint8) # index.scatter_(1, target.data.view(-1, 1), 1) index.scatter_(1, target.data.view(-1, 1).type(torch.LongTensor), 1) index_float = index.type(torch.cuda.FloatTensor) batch_m = torch.matmul(self.m_list[None, :], index_float.transpose(0,1)) batch_m = batch_m.view((-1, 1)) x_m = x - batch_m output = torch.where(index, x_m, x) return F.cross_entropy(self.s*output, target, weight=self.weight)

import torch import os import torch.nn as nn import torch.optim as optim import numpy as np import random import matplotlib.pyplot as plt class Net(nn.Module): def init(self): super(Net, self).init() self.conv1 = nn.Conv2d(1, 16, kernel_size=3,stride=1) self.pool = nn.MaxPool2d(kernel_size=2,stride=2) self.conv2 = nn.Conv2d(16, 32, kernel_size=3,stride=1) self.fc1 = nn.Linear(32 * 9 * 9, 120) self.fc2 = nn.Linear(120, 84) self.fc3 = nn.Linear(84, 2) def forward(self, x): x = self.pool(nn.functional.relu(self.conv1(x))) x = self.pool(nn.functional.relu(self.conv2(x))) x = x.view(-1, 32 * 9 * 9) x = nn.functional.relu(self.fc1(x)) x = nn.functional.relu(self.fc2(x)) x = self.fc3(x) return x net = Net() criterion = nn.CrossEntropyLoss() optimizer = optim.SGD(net.parameters(), lr=0.001, momentum=0.9) folder_path1 = 'random_matrices2' # 创建空的tensor x = torch.empty((40, 1, 42, 42)) # 遍历文件夹内的文件,将每个矩阵转化为tensor并存储 for j in range(40): for j in range(40): file_name = 'matrix_{}.npy'.format(i) file_path1 = os.path.join(folder_path1, file_name) matrix1 = np.load(file_path1) x[j] = torch.from_numpy(matrix1).unsqueeze(0) folder_path2 = 'random_label2' y = torch.empty((40, )) for k in range(40): for k in range(40): file_name = 'label_{}.npy'.format(i) file_path2 = os.path.join(folder_path2, file_name) matrix2 = np.load(file_path2) y[k] = torch.from_numpy(matrix2).unsqueeze(0) losses = [] for epoch in range(10): running_loss = 0.0 for i in range(40): inputs, labels = x[i], y[i] optimizer.zero_grad() outputs = net(inputs) loss = criterion(outputs, labels.squeeze(1)) loss.backward() optimizer.step() running_loss += loss.item() losses.append(running_loss / 40) print('[%d] loss: %.3f' % (epoch + 1, running_loss / 40)) print('Finished Training') plt.plot(losses) plt.xlabel('Epoch') plt.ylabel('Loss') plt.show() 报错:IndexError: Dimension out of range (expected to be in range of [-1, 0], but got 1) 怎么修改?

pytorch部分代码如下:class LDAMLoss(nn.Module): def init(self, cls_num_list, max_m=0.5, weight=None, s=30): super(LDAMLoss, self).init() m_list = 1.0 / np.sqrt(np.sqrt(cls_num_list)) m_list = m_list * (max_m / np.max(m_list)) m_list = torch.cuda.FloatTensor(m_list) self.m_list = m_list assert s > 0 self.s = s if weight is not None: weight = torch.FloatTensor(weight).cuda() self.weight = weight self.cls_num_list = cls_num_list def forward(self, x, target): index = torch.zeros_like(x, dtype=torch.uint8) index_float = index.type(torch.cuda.FloatTensor) batch_m = torch.matmul(self.m_list[None, :], index_float.transpose(0,1)) batch_m = batch_m.view((-1, 1)) # size=(batch_size, 1) (-1,1) x_m = x - batch_m output = torch.where(index, x_m, x) if self.weight is not None: output = output * self.weight[None, :] logit = output * self.s return F.cross_entropy(logit, target, weight=self.weight) train_loader = torch.utils.data.DataLoader(dataset_train, batch_size=BATCH_SIZE, shuffle=True,drop_last=True) test_loader = torch.utils.data.DataLoader(dataset_test, batch_size=BATCH_SIZE, shuffle=True) cls_num_list = np.zeros(classes) for , label in train_loader.dataset: cls_num_list[label] += 1 criterion_train = LDAMLoss(cls_num_list=cls_num_list, max_m=0.5, s=30) criterion_val = LDAMLoss(cls_num_list=cls_num_list, max_m=0.5, s=30) mixup_fn = Mixup( mixup_alpha=0.8, cutmix_alpha=1.0, cutmix_minmax=None, prob=0.1, switch_prob=0.5, mode='batch', label_smoothing=0.1, num_classes=classes) for batch_idx, (data, target) in enumerate(train_loader): data, target = data.to(device, non_blocking=True), Variable(target).to(device,non_blocking=True) # 3、将数据输入mixup_fn生成mixup数据 samples, targets = mixup_fn(data, target) targets = torch.tensor(targets).to(torch.long) # 4、将上一步生成的数据输入model,输出预测结果,再计算loss output = model(samples) # 5、梯度清零(将loss关于weight的导数变成0) optimizer.zero_grad() # 6、若使用混合精度 if use_amp: with torch.cuda.amp.autocast(): # 开启混合精度 loss = torch.nan_to_num(criterion_train(output, targets)) # 计算loss scaler.scale(loss).backward() # 梯度放大 torch.nn.utils.clip_grad_norm(model.parameters(), CLIP_GRAD) # 梯度裁剪,防止梯度爆炸 scaler.step(optimizer) # 更新下一次迭代的scaler scaler.update() # 否则,直接反向传播求梯度 else: loss = criterion_train(output, targets) loss.backward() torch.nn.utils.clip_grad_norm_(model.parameters(), CLIP_GRAD) optimizer.step() 报错:RuntimeError: Expected index [112, 1] to be smaller than self [16, 7] apart from dimension 1

pytorch部分代码如下:train_loss, train_acc = train(model_ft, DEVICE, train_loader, optimizer, epoch,model_ema) for batch_idx, (data, target) in enumerate(train_loader): data, target = data.to(device, non_blocking=True), Variable(target).to(device,non_blocking=True) # 3、将数据输入mixup_fn生成mixup数据 samples, targets = mixup_fn(data, target) # 4、将上一步生成的数据输入model,输出预测结果,再计算loss output = model(samples) # 5、梯度清零(将loss关于weight的导数变成0) optimizer.zero_grad() # 6、若使用混合精度 if use_amp: with torch.cuda.amp.autocast(): # 开启混合精度 loss = torch.nan_to_num(criterion_train(output, targets)) # 计算loss scaler.scale(loss).backward() # 梯度放大 torch.nn.utils.clip_grad_norm_(model.parameters(), CLIP_GRAD) if not (self._backward_hooks or self._forward_hooks or self._forward_pre_hooks or _global_backward_hooks or global_forward_hooks or global_forward_pre_hooks): return forward_call(*input, **kwargs) class LDAMLoss(nn.Module): def init(self, cls_num_list, max_m=0.5, weight=None, s=30): super(LDAMLoss, self).init() m_list = 1.0 / np.sqrt(np.sqrt(cls_num_list)) m_list = m_list * (max_m / np.max(m_list)) m_list = torch.cuda.FloatTensor(m_list) self.m_list = m_list assert s > 0 self.s = s self.weight = weight def forward(self, x, target): index = torch.zeros_like(x, dtype=torch.uint8) target = torch.clamp(target, 0, index.size(1) - 1) index.scatter(1, target.data.view(-1, 1).type(torch.int64), 1) index_float = index.type(torch.cuda.FloatTensor) batch_m = torch.matmul(self.m_list[None, :], index_float.transpose(0,1)) batch_m = batch_m.view((-1, 1)) x_m = x - batch_m output = torch.where(index, x_m, x) return F.cross_entropy(self.s*output, target, weight=self.weight) 报错:RuntimeError: Expected index [112, 1] to be smaller than self [16, 7] apart from dimension 1 帮我看看如何修改源代码

pytorch部分代码如下:train_loss, train_acc = train(model_ft, DEVICE, train_loader, optimizer, epoch,model_ema) for batch_idx, (data, target) in enumerate(train_loader): data, target = data.to(device, non_blocking=True), Variable(target).to(device,non_blocking=True) # 3、将数据输入mixup_fn生成mixup数据 samples, targets = mixup_fn(data, target) # 4、将上一步生成的数据输入model,输出预测结果,再计算loss output = model(samples) # 5、梯度清零(将loss关于weight的导数变成0) optimizer.zero_grad() # 6、若使用混合精度 if use_amp: with torch.cuda.amp.autocast(): # 开启混合精度 loss = torch.nan_to_num(criterion_train(output, targets)) # 计算loss scaler.scale(loss).backward() # 梯度放大 torch.nn.utils.clip_grad_norm_(model.parameters(), CLIP_GRAD) if not (self._backward_hooks or self._forward_hooks or self._forward_pre_hooks or _global_backward_hooks or global_forward_hooks or global_forward_pre_hooks): return forward_call(input, **kwargs) class LDAMLoss(nn.Module): def init(self, cls_num_list, max_m=0.5, weight=None, s=30): super(LDAMLoss, self).init() m_list = 1.0 / np.sqrt(np.sqrt(cls_num_list)) m_list = m_list * (max_m / np.max(m_list)) m_list = torch.cuda.FloatTensor(m_list) self.m_list = m_list assert s > 0 self.s = s self.weight = weight def forward(self, x, target): index = torch.zeros_like(x, dtype=torch.uint8) index.scatter(1, target.data.view(-1, 1).type(torch.int64), 1) index_float = index.type(torch.cuda.FloatTensor) batch_m = torch.matmul(self.m_list[None, :], index_float.transpose(0,1)) batch_m = batch_m.view((-1, 1)) x_m = x - batch_m output = torch.where(index, x_m, x) return F.cross_entropy(self.soutput, target, weight=self.weight) 报错:RuntimeError: Expected index [112, 1] to be smaller than self [16, 7] apart from dimension 1 帮我看看如何修改源代码

class PointnetFPModule(nn.Module): r"""Propigates the features of one set to another""" def __init__(self, *, mlp: List[int], bn: bool = True): """ :param mlp: list of int :param bn: whether to use batchnorm """ super().__init__() self.mlp = pt_utils.SharedMLP(mlp, bn=bn) def forward( self, unknown: torch.Tensor, known: torch.Tensor, unknow_feats: torch.Tensor, known_feats: torch.Tensor ) -> torch.Tensor: """ :param unknown: (B, n, 3) tensor of the xyz positions of the unknown features :param known: (B, m, 3) tensor of the xyz positions of the known features :param unknow_feats: (B, C1, n) tensor of the features to be propigated to :param known_feats: (B, C2, m) tensor of features to be propigated :return: new_features: (B, mlp[-1], n) tensor of the features of the unknown features """ if known is not None: dist, idx = pointnet2_utils.three_nn(unknown, known) dist_recip = 1.0 / (dist + 1e-8) norm = torch.sum(dist_recip, dim=2, keepdim=True) weight = dist_recip / norm interpolated_feats = pointnet2_utils.three_interpolate(known_feats, idx, weight) else: interpolated_feats = known_feats.expand(*known_feats.size()[0:2], unknown.size(1)) if unknow_feats is not None: new_features = torch.cat([interpolated_feats, unknow_feats], dim=1) # (B, C2 + C1, n) else: new_features = interpolated_feats new_features = new_features.unsqueeze(-1) new_features = self.mlp(new_features) return new_features.squeeze(-1)运行时报错: File "/root/autodl-tmp/project/tools/../pointnet2_lib/pointnet2/pointnet2_modules.py", line 165, in forward new_features = torch.cat([interpolated_feats, unknow_feats], dim=1) # (B, C2 + C1, n) RuntimeError: Sizes of tensors must match except in dimension 2. Got 64 and 256 (The offending index is 0)

from skimage.segmentation import slic, mark_boundaries import torchvision.transforms as transforms import numpy as np from PIL import Image import matplotlib.pyplot as plt import torch.nn as nn import torch # 定义超像素池化层 class SuperpixelPooling(nn.Module): def init(self, n_segments): super(SuperpixelPooling, self).init() self.n_segments = n_segments def forward(self, x): # 获取超像素标记图 segments = slic(x, n_segments=self.n_segments, compactness=10) # 将超像素标记图转换为张量 segments_tensor = torch.from_numpy(segments).unsqueeze(0).float() # 在超像素维度上进行最大池化 pooled = nn.AdaptiveMaxPool2d((self.n_segments, 1))(x * segments_tensor) # 压缩超像素维度 pooled = pooled.squeeze(3) # 返回池化后的特征图 return pooled # 加载图像 image = Image.open('3.jpg') # 转换为 PyTorch 张量 transform = transforms.ToTensor() img_tensor = transform(image).unsqueeze(0) # 将 PyTorch 张量转换为 Numpy 数组 img_np = img_tensor.numpy().transpose(0, 2, 3, 1)[0] # 使用 SLIC 算法生成超像素标记图 segments = slic(img_np, n_segments=60, compactness=10) # 将超像素标记图转换为张量 segments_tensor = torch.from_numpy(segments).unsqueeze(0).float() # 将超像素索引映射可视化 plt.imshow(segments, cmap='gray') plt.show() # 将 Numpy 数组转换为 PIL 图像 segment_img = Image.fromarray((mark_boundaries(img_np, segments) * 255).astype(np.uint8)) # 保存超像素索引映射可视化 segment_img.save('segment_map.jpg') # 使用超像素池化层进行池化 pooling_layer = SuperpixelPooling(n_segments=60) pooled_tensor = pooling_layer(img_tensor) # 将超像素池化后的特征图可视化 plt.imshow(pooled_tensor.squeeze().numpy().transpose(1, 0), cmap='gray') plt.show() 上述代码出现问题: pooled = nn.AdaptiveMaxPool2d((self.n_segments, 1))(x * segments_tensor) RuntimeError: The size of tensor a (512) must match the size of tensor b (3) at non-singleton dimension 2,如何修改

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