data = f['mask_1'][:]

时间: 2023-05-20 21:07:11 浏览: 31
这是一个 Python 代码片段,其中 f 是一个文件对象,'mask_1' 是该文件中的一个数据集名称,[:] 表示获取该数据集的所有值。具体来说,这段代码将 'mask_1' 数据集中的所有值赋给了变量 data。
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def get_CIFAR10_data(num_training=5000, num_validation=500, num_test=500): cifar10_dir = r'D:\daima\cifar-10-python\cifar-10-batches-py' X_train, y_train, X_test, y_test = load_CIFAR10(cifar10_dir) print(X_train.shape) mask = range(num_training, num_training + num_validation) X_val = X_train[mask] y_val = y_train[mask] mask = range(num_training) X_train = X_train[mask] y_train = y_train[mask] mask = range(num_test) X_test = X_test[mask] y_test = y_test[mask] mean_image = np.mean(X_train, axis=0) X_train -= mean_image X_val -= mean_image X_test -= mean_image X_train = X_train.transpose(0, 3, 1, 2).copy() X_val = X_val.transpose(0, 3, 1, 2).copy() X_test = X_test.transpose(0, 3, 1, 2).copy() return { 'X_train': X_train, 'y_train': y_train, 'X_val': X_val, 'y_val': y_val, 'X_test': X_test, 'y_test': y_test, }这是一个加载cifar10数据集的函数,如何修改使其能加载mnist数据集,不使用使用 TensorFlow

要加载MNIST数据集,可以使用以下代码: ``` import numpy as np import gzip def load_mnist(path, kind='train'): """Load MNIST data from `path`""" labels_path = f'{path}/{kind}-labels-idx1-ubyte.gz' images_path = f'{path}/{kind}-images-idx3-ubyte.gz' with gzip.open(labels_path, 'rb') as lbpath: labels = np.frombuffer(lbpath.read(), dtype=np.uint8, offset=8) with gzip.open(images_path, 'rb') as imgpath: images = np.frombuffer(imgpath.read(), dtype=np.uint8, offset=16).reshape(len(labels), 784) return images, labels def get_MNIST_data(num_training=50000, num_validation=10000, num_test=10000): mnist_dir = r'path/to/MNIST' X_train, y_train = load_mnist(mnist_dir, kind='train') X_test, y_test = load_mnist(mnist_dir, kind='t10k') mask = range(num_training, num_training + num_validation) X_val = X_train[mask] y_val = y_train[mask] mask = range(num_training) X_train = X_train[mask] y_train = y_train[mask] mask = range(num_test) X_test = X_test[mask] y_test = y_test[mask] # normalize images mean_image = np.mean(X_train, axis=0) X_train -= mean_image X_val -= mean_image X_test -= mean_image # reshape images to 28x28x1 X_train = X_train.reshape(-1, 1, 28, 28) X_val = X_val.reshape(-1, 1, 28, 28) X_test = X_test.reshape(-1, 1, 28, 28) return { 'X_train': X_train, 'y_train': y_train, 'X_val': X_val, 'y_val': y_val, 'X_test': X_test, 'y_test': y_test } ``` 其中 `load_mnist` 函数会从指定路径加载MNIST数据集,返回的 `images` 是一个形状为 `(num_samples, 784)` 的numpy数组,`labels`是一个形状为 `(num_samples,)` 的numpy数组。 `get_MNIST_data` 函数会调用 `load_mnist` 函数来加载数据集,并进行预处理,最后返回一个字典,包含训练集、验证集和测试集的图像和标签。

import os import random import numpy as np import cv2 import keras from create_unet import create_model img_path = 'data_enh/img' mask_path = 'data_enh/mask' # 训练集与测试集的切分 img_files = np.array(os.listdir(img_path)) data_num = len(img_files) train_num = int(data_num * 0.8) train_ind = random.sample(range(data_num), train_num) test_ind = list(set(range(data_num)) - set(train_ind)) train_ind = np.array(train_ind) test_ind = np.array(test_ind) train_img = img_files[train_ind] # 训练的数据 test_img = img_files[test_ind] # 测试的数据 def get_mask_name(img_name): mask = [] for i in img_name: mask_name = i.replace('.jpg', '.png') mask.append(mask_name) return np.array(mask) train_mask = get_mask_name(train_img) test_msak = get_mask_name(test_img) def generator(img, mask, batch_size): num = len(img) while True: IMG = [] MASK = [] for i in range(batch_size): index = np.random.choice(num) img_name = img[index] mask_name = mask[index] img_temp = os.path.join(img_path, img_name) mask_temp = os.path.join(mask_path, mask_name) temp_img = cv2.imread(img_temp) temp_mask = cv2.imread(mask_temp, 0)/255 temp_mask = np.reshape(temp_mask, [256, 256, 1]) IMG.append(temp_img) MASK.append(temp_mask) IMG = np.array(IMG) MASK = np.array(MASK) yield IMG, MASK # train_data = generator(train_img, train_mask, 32) # temp_data = train_data.__next__() # 计算dice系数 def dice_coef(y_true, y_pred): y_true_f = keras.backend.flatten(y_true) y_pred_f = keras.backend.flatten(y_pred) intersection = keras.backend.sum(y_true_f * y_pred_f) area_true = keras.backend.sum(y_true_f * y_true_f) area_pred = keras.backend.sum(y_pred_f * y_pred_f) dice = (2 * intersection + 1)/(area_true + area_pred + 1) return dice # 自定义损失函数,dice_loss def dice_coef_loss(y_true, y_pred): return 1 - dice_coef(y_true, y_pred) # 模型的创建 model = create_model() # 模型的编译 model.compile(optimizer='Adam', loss=dice_coef_loss, metrics=[dice_coef]) # 模型的训练 history = model.fit_generator(generator(train_img, train_mask, 4), steps_per_epoch=100, epochs=10, validation_data=generator(test_img, test_msak, 4), validation_steps=4 ) # 模型的保存 model.save('unet_model.h5') # 模型的读取 model = keras.models.load_model('unet_model.h5', custom_objects={'dice_coef_loss': dice_coef_loss, 'dice_coef': dice_coef}) # 获取测试数据 test_generator = generator(test_img, test_msak, 32) img, mask = test_generator.__next__() # 模型的测试 model.evaluate(img, mask) # [0.11458712816238403, 0.885412871837616] 94%

上面这段代码是在导入一些库。它导入了 OS 库,Random 库,NumPy 库,CV2 库,Keras 库,以及一个叫做 Create_unet 的自定义模块。它还定义了两个字符串变量:img_path 和 mask_path,分别存储了图像数据和掩码数据的路径。

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def get_Image_dim_len(png_dir: str,jpg_dir:str): png = Image.open(png_dir) png_w,png_h=png.width,png.height #若第十行报错,说明jpg图片没有对应的png图片 png_dim_len = len(np.array(png).shape) assert png_dim_len==2,"提示:存在三维掩码图" jpg=Image.open(jpg_dir) jpg = ImageOps.exif_transpose(jpg) jpg.save(jpg_dir) jpg_w,jpg_h=jpg.width,jpg.height print(jpg_w,jpg_h,png_w,png_h) assert png_w==jpg_w and png_h==jpg_h,print("提示:%s mask图与原图宽高参数不一致"%(png_dir)) """2.读取单个图像均值和方差""" def pixel_operation(image_path: str): img = cv.imread(image_path, cv.IMREAD_COLOR) means, dev = cv.meanStdDev(img) return means,dev """3.分割数据集,生成label文件""" # 原始数据集 ann上一级 data_root = './work/voc_data02' #图像地址 image_dir="./JPEGImages" # ann图像文件夹 ann_dir = "./SegmentationClass" # txt文件保存路径 split_dir = './ImageSets/Segmentation' mmengine.mkdir_or_exist(osp.join(data_root, split_dir)) png_filename_list = [osp.splitext(filename)[0] for filename in mmengine.scandir( osp.join(data_root, ann_dir), suffix='.png')] jpg_filename_list=[osp.splitext(filename)[0] for filename in mmengine.scandir( osp.join(data_root, image_dir), suffix='.jpg')] assert len(jpg_filename_list)==len(png_filename_list),"提示:原图与掩码图数量不统一" print("数量检查无误") for i in range(10): random.shuffle(jpg_filename_list) red_num=0 black_num=0 with open(osp.join(data_root, split_dir, 'trainval.txt'), 'w+') as f: length = int(len(jpg_filename_list)) for line in jpg_filename_list[:length]: pngpath=osp.join(data_root,ann_dir,line+'.bmp') jpgpath=osp.join(data_root,image_dir,line+'.bmp') get_Image_dim_len(pngpath,jpgpath) img=cv.imread(pngpath,cv.IMREAD_GRAYSCALE) red_num+=len(img)*len(img[0])-len(img[img==0]) black_num+=len(img[img==0]) f.writelines(line + '\n') value=0 train_mean,train_dev=[[0.0,0.0,0.0]],[[0.0,0.0,0.0]] with open(osp.join(data_root, split_dir, 'train.txt'), 'w+') as f: train_length = int(len(jpg_filename_list) * 7/ 10) for line in jpg_filename_list[:train_length]: jpgpath=osp.join(data_root,image_dir,line+'.bmp') mean,dev=pixel_operation(jpgpath) train_mean+=mean train_dev+=dev f.writelines(line + '\n') with open(osp.join(data_root, split_dir, 'val.txt'), 'w+') as f: for line in jpg_filename_list[train_length:]: jpgpath=osp.join(data_root,image_dir,line+'.bmp') mean,dev=pixel_operation(jpgpath) train_mean+=mean train_dev+=dev f.writelines(line + '\n') 帮我把这段代码改成bmp图像可以制作数据集的代码

class SVDRecommender: def init(self, k=50, ncv=None, tol=0, which='LM', v0=None, maxiter=None, return_singular_vectors=True, solver='arpack'): self.k = k self.ncv = ncv self.tol = tol self.which = which self.v0 = v0 self.maxiter = maxiter self.return_singular_vectors = return_singular_vectors self.solver = solver def svds(self, A): if which == 'LM': largest = True elif which == 'SM': largest = False else: raise ValueError("which must be either 'LM' or 'SM'.") if not (isinstance(A, LinearOperator) or isspmatrix(A) or is_pydata_spmatrix(A)): A = np.asarray(A) n, m = A.shape if k <= 0 or k >= min(n, m): raise ValueError("k must be between 1 and min(A.shape), k=%d" % k) if isinstance(A, LinearOperator): if n > m: X_dot = A.matvec X_matmat = A.matmat XH_dot = A.rmatvec XH_mat = A.rmatmat else: X_dot = A.rmatvec X_matmat = A.rmatmat XH_dot = A.matvec XH_mat = A.matmat dtype = getattr(A, 'dtype', None) if dtype is None: dtype = A.dot(np.zeros([m, 1])).dtype else: if n > m: X_dot = X_matmat = A.dot XH_dot = XH_mat = _herm(A).dot else: XH_dot = XH_mat = A.dot X_dot = X_matmat = _herm(A).dot def matvec_XH_X(x): return XH_dot(X_dot(x)) def matmat_XH_X(x): return XH_mat(X_matmat(x)) XH_X = LinearOperator(matvec=matvec_XH_X, dtype=A.dtype, matmat=matmat_XH_X, shape=(min(A.shape), min(A.shape))) # Get a low rank approximation of the implicitly defined gramian matrix. eigvals, eigvec = eigsh(XH_X, k=k, tol=tol ** 2, maxiter=maxiter, ncv=ncv, which=which, v0=v0) # Gramian matrix has real non-negative eigenvalues. eigvals = np.maximum(eigvals.real, 0) # Use complex detection of small eigenvalues from pinvh. t = eigvec.dtype.char.lower() factor = {'f': 1E3, 'd': 1E6} cond = factor[t] * np.finfo(t).eps cutoff = cond * np.max(eigvals) # Get a mask indicating which eigenpairs are not degenerate tiny, # and create a reordering array for thresholded singular values. above_cutoff = (eigvals > cutoff) nlarge = above_cutoff.sum() nsmall = k - nlarge slarge = np.sqrt(eigvals[above_cutoff]) s = np.zeros_like(eigvals) s[:nlarge] = slarge if not return_singular_vectors: return np.sort(s) if n > m: vlarge = eigvec[:, above_cutoff] ularge = X_matmat(vlarge) / slarge if return_singular_vectors != 'vh' else None vhlarge = _herm(vlarge) else: ularge = eigvec[:, above_cutoff] vhlarge = _herm(X_matmat(ularge) / slarge) if return_singular_vectors != 'u' else None u = _augmented_orthonormal_cols(ularge, nsmall) if ularge is not None else None vh = _augmented_orthonormal_rows(vhlarge, nsmall) if vhlarge is not None else None indexes_sorted = np.argsort(s) s = s[indexes_sorted] if u is not None: u = u[:, indexes_sorted] if vh is not None: vh = vh[indexes_sorted] return u, s, vh将这段代码放入一个.py文件中,用Spyder查看,有报错,可能是缩进有问题,无法被调用,根据这个问题,给出解决办法,给出改正后的完整代码

import pickle import numpy as np import os # from scipy.misc import imread def load_CIFAR_batch(filename): with open(filename, 'rb') as f: datadict = pickle.load(f, encoding='bytes') X = datadict[b'data'] Y = datadict[b'labels'] X = X.reshape(10000, 3, 32, 32).transpose(0, 2, 3, 1).astype("float") Y = np.array(Y) return X, Y def load_CIFAR10(ROOT): xs = [] ys = [] for b in range(1, 2): f = os.path.join(ROOT, 'data_batch_%d' % (b,)) X, Y = load_CIFAR_batch(f) xs.append(X) ys.append(Y) Xtr = np.concatenate(xs) Ytr = np.concatenate(ys) del X, Y Xte, Yte = load_CIFAR_batch(os.path.join(ROOT, 'test_batch')) return Xtr, Ytr, Xte, Yte def get_CIFAR10_data(num_training=5000, num_validation=500, num_test=500): cifar10_dir = r'D:\daima\cifar-10-python\cifar-10-batches-py' X_train, y_train, X_test, y_test = load_CIFAR10(cifar10_dir) print(X_train.shape) mask = range(num_training, num_training + num_validation) X_val = X_train[mask] y_val = y_train[mask] mask = range(num_training) X_train = X_train[mask] y_train = y_train[mask] mask = range(num_test) X_test = X_test[mask] y_test = y_test[mask] mean_image = np.mean(X_train, axis=0) X_train -= mean_image X_val -= mean_image X_test -= mean_image X_train = X_train.transpose(0, 3, 1, 2).copy() X_val = X_val.transpose(0, 3, 1, 2).copy() X_test = X_test.transpose(0, 3, 1, 2).copy() return { 'X_train': X_train, 'y_train': y_train, 'X_val': X_val, 'y_val': y_val, 'X_test': X_test, 'y_test': y_test, } def load_models(models_dir): models = {} for model_file in os.listdir(models_dir): with open(os.path.join(models_dir, model_file), 'rb') as f: try: models[model_file] = pickle.load(f)['model'] except pickle.UnpicklingError: continue return models这是一个加载cifar10数据集的函数,如何修改使其能加载mnist数据集,不使用TensorFlow

class svd_recommender_py(): #svd矩阵推荐 def svds(A, ncv=None, tol=0, which='LM', v0=None, maxiter=None, return_singular_vectors=True, solver='arpack'): if which == 'LM': largest = True elif which == 'SM': largest = False else: raise ValueError("which must be either 'LM' or 'SM'.") if not (isinstance(A, LinearOperator) or isspmatrix(A) or is_pydata_spmatrix(A)): A = np.asarray(A) n, m = A.shape if k <= 0 or k >= min(n, m): raise ValueError("k must be between 1 and min(A.shape), k=%d" % k) if isinstance(A, LinearOperator): if n > m: X_dot = A.matvec X_matmat = A.matmat XH_dot = A.rmatvec XH_mat = A.rmatmat else: X_dot = A.rmatvec X_matmat = A.rmatmat XH_dot = A.matvec XH_mat = A.matmat dtype = getattr(A, 'dtype', None) if dtype is None: dtype = A.dot(np.zeros([m, 1])).dtype else: if n > m: X_dot = X_matmat = A.dot XH_dot = XH_mat = _herm(A).dot else: XH_dot = XH_mat = A.dot X_dot = X_matmat = _herm(A).dot def matvec_XH_X(x): return XH_dot(X_dot(x)) def matmat_XH_X(x): return XH_mat(X_matmat(x)) XH_X = LinearOperator(matvec=matvec_XH_X, dtype=A.dtype, matmat=matmat_XH_X, shape=(min(A.shape), min(A.shape))) # Get a low rank approximation of the implicitly defined gramian matrix. #获得隐式定义的格拉米矩阵的低秩近似。 #这不是解决问题的稳定方法。 solver == 'arpack' eigvals, eigvec = eigsh(XH_X, k=k, tol=tol ** 2, maxiter=maxiter, ncv=ncv, which=which, v0=v0) #格拉米矩阵具有实非负特征值。 eigvals = np.maximum(eigvals.real, 0) #使用来自pinvh的小特征值的复杂检测。 t = eigvec.dtype.char.lower() factor = {'f': 1E3, 'd': 1E6} cond = factor[t] * np.finfo(t).eps cutoff = cond * np.max(eigvals) #得到一个指示哪些本征对不是退化微小的掩码, #并创建阈值奇异值的重新排序数组。 above_cutoff = (eigvals > cutoff) nlarge = above_cutoff.sum() nsmall = k - nlarge slarge = np.sqrt(eigvals[above_cutoff]) s = np.zeros_like(eigvals) s[:nlarge] = slarge if not return_singular_vectors: return np.sort(s) if n > m: vlarge = eigvec[:, above_cutoff] ularge = X_matmat(vlarge) / slarge if return_singular_vectors != 'vh' else None vhlarge = _herm(vlarge) else: ularge = eigvec[:, above_cutoff] vhlarge = _herm(X_matmat(ularge) / slarge) if return_singular_vectors != 'u' else None u = _augmented_orthonormal_cols(ularge, nsmall) if ularge is not None else None vh = _augmented_orthonormal_rows(vhlarge, nsmall) if vhlarge is not None else None indexes_sorted = np.argsort(s) s = s[indexes_sorted] if u is not None: u = u[:, indexes_sorted] if vh is not None: vh = vh[indexes_sorted] return u, s, vh这段代码主要是为了将scipy包中的SVD计算方法封装成一个自定义类,是否封装合适?如果不合适,给出修改后的完整代码

import os import json import csv import cv2 from segment_anything import SamPredictor, sam_model_registry folder_path = 'D:\\segment-anything-main\\segment-anything-main\\input\\Normal\\' # 替换为实际的文件夹路径 output_file = 'D:\\细胞识别\\output.csv' # 替换为实际的输出文件路径 data_list = [] # 用于存储所有的坐标信息 for filename in os.listdir(folder_path): if filename.endswith('.json'): json_path = os.path.join(folder_path, filename) # 读取JSON文件 with open(json_path) as file: data = json.load(file) # 获取多边形坐标 shapes = data['shapes'] polygon_points = shapes[0]['points'] # 假设只有一个多边形标注 # 计算最小包围框的左上角和右下角坐标 x_coordinates = [point[0] for point in polygon_points] y_coordinates = [point[1] for point in polygon_points] min_x = min(x_coordinates) min_y = min(y_coordinates) max_x = max(x_coordinates) max_y = max(y_coordinates) # 将坐标信息添加到列表中 data_list.append({'Filename': filename, 'Min_X': min_x, 'Min_Y': min_y, 'Max_X': max_x, 'Max_Y': max_y}) # 写入CSV文件 with open(output_file, 'w', newline='') as file: fieldnames = ['Filename', 'Min_X', 'Min_Y', 'Max_X', 'Max_Y'] writer = csv.DictWriter(file, fieldnames=fieldnames) writer.writeheader() writer.writerows(data_list) # 生成input_prompts input_prompts = [] for data in data_list: input_prompt = f"处理文件:{data['Filename']},左上角坐标:({data['Min_X']}, {data['Min_Y']}),右下角坐标:({data['Max_X']}, {data['Max_Y']})" input_prompts.append(input_prompt) sam = sam_model_registry["default"](checkpoint="D:\\segment-anything-main\\segment-anything-main\\sam_vit_h_4b8939.pth") predictor = SamPredictor(sam) for filename in os.listdir(folder_path): if filename.lower().endswith(('.png', '.jpg', '.jpeg')): image_path = os.path.join(folder_path, filename) # Load and set the image for prediction your_image = cv2.imread(image_path) predictor.set_image(your_image) # Perform prediction using input prompts masks, _, _ = predictor.predict(input_prompts) # Perform further processing or analysis on the predicted masks for i, mask in enumerate(masks): mask_filename = f"mask_{i + 1}_{filename}" mask_path = os.path.join(folder_path, mask_filename) cv2.imwrite(mask_path, mask)

优化代码 def cluster_format(self, start_time, end_time, save_on=True, data_clean=False, data_name=None): """ local format function is to format data from beihang. :param start_time: :param end_time: :return: """ # 户用簇级数据清洗 if data_clean: unused_index_col = [i for i in self.df.columns if 'Unnamed' in i] self.df.drop(columns=unused_index_col, inplace=True) self.df.drop_duplicates(inplace=True, ignore_index=True) self.df.reset_index(drop=True, inplace=True) dupli_header_lines = np.where(self.df['sendtime'] == 'sendtime')[0] self.df.drop(index=dupli_header_lines, inplace=True) self.df = self.df.apply(pd.to_numeric, errors='ignore') self.df['sendtime'] = pd.to_datetime(self.df['sendtime']) self.df.sort_values(by='sendtime', inplace=True, ignore_index=True) self.df.to_csv(data_name, index=False) # 调用基本格式化处理 self.df = super().format(start_time, end_time) module_number_register = np.unique(self.df['bat_module_num']) # if registered m_num is 0 and not changed, there is no module data if not np.any(module_number_register): logger.logger.warning("No module data!") sys.exit() if 'bat_module_voltage_00' in self.df.columns: volt_ref = 'bat_module_voltage_00' elif 'bat_module_voltage_01' in self.df.columns: volt_ref = 'bat_module_voltage_01' elif 'bat_module_voltage_02' in self.df.columns: volt_ref = 'bat_module_voltage_02' else: logger.logger.warning("No module data!") sys.exit() self.df.dropna(axis=0, subset=[volt_ref], inplace=True) self.df.reset_index(drop=True, inplace=True) self.headers = list(self.df.columns) # time duration of a cluster self.length = len(self.df) if self.length == 0: logger.logger.warning("After cluster data clean, no effective data!") raise ValueError("No effective data after cluster data clean.") self.cluster_stats(save_on) for m in range(self.mod_num): print(self.clusterid, self.mod_num) self.module_list.append(np.unique(self.df[f'bat_module_sn_{str(m).zfill(2)}'].dropna())[0])

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